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Bioconductor - OmaDB (development version)

OmaDB

This is the development version of OmaDB; for the stable release version, see OmaDB.

R wrapper for the OMA REST API

Bioconductor version: Development (3.22)

A package for the orthology prediction data download from OMA database.

Author: Klara Kaleb

Maintainer: Klara Kaleb <klara.kaleb18 at ic.ac.uk>, Adrian Altenhoff <adrian.altenhoff at inf.ethz.ch>

Citation (from within R, enter citation("OmaDB")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OmaDB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmaDB")
Details biocViews Annotation, ComparativeGenomics, FunctionalGenomics, FunctionalPrediction, GO, Genetics, Software Version 2.25.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL-3 Depends R (>= 3.5), httr (>= 1.2.1), plyr (>= 1.8.4) Imports utils, ape, Biostrings, GenomicRanges, IRanges, methods, topGO, jsonlite System Requirements URL https://github.com/DessimozLab/OmaDB Bug Reports https://github.com/DessimozLab/OmaDB/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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