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Bioconductor - NanoStringNCTools (development version)

NanoStringNCTools

This is the development version of NanoStringNCTools; for the stable release version, see NanoStringNCTools.

NanoString nCounter Tools

Bioconductor version: Development (3.22)

Tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

Author: Patrick Aboyoun [aut], Nicole Ortogero [aut], Maddy Griswold [cre], Zhi Yang [ctb]

Maintainer: Maddy Griswold <mgriswold at nanostring.com>

Citation (from within R, enter citation("NanoStringNCTools")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("NanoStringNCTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NanoStringNCTools")
Details biocViews CellBasedAssays, DataImport, GeneExpression, ProprietaryPlatforms, Proteomics, RNASeq, Software, Transcription, Transcriptomics, mRNAMicroarray Version 1.17.1 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License MIT Depends R (>= 3.6), Biobase, S4Vectors, ggplot2 Imports BiocGenerics, Biostrings, ggbeeswarm, ggiraph, ggthemes, grDevices, IRanges, methods, pheatmap, RColorBrewer, stats, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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