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Bioconductor - MsBackendMgf (development version)

MsBackendMgf

This is the development version of MsBackendMgf; for the stable release version, see MsBackendMgf.

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Bioconductor version: Development (3.22)

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] ORCID: 0000-0002-1520-2268 , Johannes Rainer [aut] ORCID: 0000-0002-6977-7147 , Sebastian Gibb [aut] ORCID: 0000-0001-7406-4443 , Michael Witting [ctb] ORCID: 0000-0002-1462-4426 , Adriano Rutz [ctb] ORCID: 0000-0003-0443-9902 , Corey Broeckling [ctb] ORCID: 0000-0002-6158-827X

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Citation (from within R, enter citation("MsBackendMgf")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MsBackendMgf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMgf")
Details biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software Version 1.17.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License Artistic-2.0 Depends R (>= 4.0), Spectra(>= 1.5.14) Imports ProtGenerics(>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats System Requirements URL https://github.com/RforMassSpectrometry/MsBackendMgf Bug Reports https://github.com/RforMassSpectrometry/MsBackendMgf/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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