This is the development version of MsBackendMassbank; for the stable release version, see MsBackendMassbank.
Mass Spectrometry Data Backend for MassBank record FilesBioconductor version: Development (3.22)
Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.
Author: RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] ORCID: 0000-0002-1462-4426 , Johannes Rainer [aut] ORCID: 0000-0002-6977-7147 , Michael Stravs [ctb]
Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>
Citation (from within R, entercitation("MsBackendMassbank")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MsBackendMassbank")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendMassbank")
Description and usage of MsBackendMassbank HTML R Script Reference Manual PDF Details biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Software Version 1.17.1 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License Artistic-2.0 Depends R (>= 4.0), Spectra(>= 1.15.10) Imports BiocParallel, S4Vectors, IRanges, methods, ProtGenerics(>= 1.35.3), MsCoreUtils, DBI, utils System Requirements URL https://github.com/RforMassSpectrometry/MsBackendMassbank Bug Reports https://github.com/RforMassSpectrometry/MsBackendMassbank/issues See More Package Archives
Follow Installation instructions to use this package in your R session.
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