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Bioconductor - MotifDb (development version)

MotifDb

This is the development version of MotifDb; for the stable release version, see MotifDb.

An Annotated Collection of Protein-DNA Binding Sequence Motifs

Bioconductor version: Development (3.22)

More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.

Author: Paul Shannon, Matt Richards

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Citation (from within R, enter citation("MotifDb")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MotifDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotifDb")
Details See More Suggests RUnit, seqLogo, BiocStyle, knitr, rmarkdown, formatR, markdown Linking To Enhances Depends On Me motifbreakR, generegulation Imports Me rTRMui, TENET Suggests Me ATACseqQC, DiffLogo, enhancerHomologSearch, igvR, memes, MMDiff2, motifcounter, motifStack, motifTestR, profileScoreDist, PWMEnrich, rTRM, TFutils, universalmotif, vtpnet Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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