This is the development version of MoleculeExperiment; for the stable release version, see MoleculeExperiment.
Prioritising a molecule-level storage of Spatial Transcriptomics DataBioconductor version: Development (3.22)
MoleculeExperiment contains functions to create and work with objects from the new MoleculeExperiment class. We introduce this class for analysing molecule-based spatial transcriptomics data (e.g., Xenium by 10X, Cosmx SMI by Nanostring, and Merscope by Vizgen). This allows researchers to analyse spatial transcriptomics data at the molecule level, and to have standardised data formats accross vendors.
Author: Bárbara Zita Peters Couto [aut], Nicholas Robertson [aut], Ellis Patrick [aut], Shila Ghazanfar [aut, cre]
Maintainer: Shila Ghazanfar <shazanfar at gmail.com>
Citation (from within R, entercitation("MoleculeExperiment")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MoleculeExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MoleculeExperiment")Follow Installation instructions to use this package in your R session.
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