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Bioconductor - MinimumDistance (development version)

MinimumDistance

This is the development version of MinimumDistance; for the stable release version, see MinimumDistance.

A Package for De Novo CNV Detection in Case-Parent Trios

Bioconductor version: Development (3.22)

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at jhu.edu>

Citation (from within R, enter citation("MinimumDistance")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MinimumDistance")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MinimumDistance")
Detection of de novo copy number alterations in case-parent trios PDF R Script Reference Manual PDF NEWS Text Details biocViews CopyNumberVariation, Microarray, SNP, Software Version 1.53.0 In Bioconductor since BioC 2.10 (R-2.15) (13.5 years) License Artistic-2.0 Depends R (>= 3.5.0), VanillaICE(>= 1.47.1) Imports methods, BiocGenerics, MatrixGenerics, Biobase, S4Vectors(>= 0.23.18), IRanges, GenomeInfoDb, GenomicRanges(>= 1.17.16), SummarizedExperiment(>= 1.15.4), oligoClasses, DNAcopy, ff, foreach, matrixStats, lattice, data.table, grid, stats, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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