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Bioconductor - MiRaGE (development version)

MiRaGE

This is the development version of MiRaGE; for the stable release version, see MiRaGE.

MiRNA Ranking by Gene Expression

Bioconductor version: Development (3.22)

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("MiRaGE")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MiRaGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiRaGE")
Details biocViews GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software Version 1.51.0 In Bioconductor since BioC 2.11 (R-2.15) (13 years) License GPL Depends R (>= 3.1.0), Biobase(>= 2.23.3) Imports BiocGenerics, S4Vectors, AnnotationDbi, BiocManager System Requirements URL See More Suggests seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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