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Bioconductor - MetaNeighbor (development version)

MetaNeighbor

This is the development version of MetaNeighbor; for the stable release version, see MetaNeighbor.

Single cell replicability analysis

Bioconductor version: Development (3.22)

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Stephan Fischer [ctb], Jesse Gillis [aut]

Maintainer: Stephan Fischer <fischer at cshl.edu>

Citation (from within R, enter citation("MetaNeighbor")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MetaNeighbor")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaNeighbor")
Details biocViews GO, GeneExpression, ImmunoOncology, MultipleComparison, SingleCell, Software, Transcriptomics Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License MIT + file LICENSE Depends R (>= 3.5) Imports grDevices, graphics, methods, stats (>= 3.4), utils (>= 3.4), Matrix (>= 1.2), matrixStats (>= 0.54), beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1.2), SummarizedExperiment(>= 1.12), SingleCellExperiment, igraph, dplyr, tidyr, tibble, ggplot2 System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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