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Bioconductor - MOSim (development version)

MOSim

This is the development version of MOSim; for the stable release version, see MOSim.

Multi-Omics Simulation (MOSim)

Bioconductor version: Development (3.22)

MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.

Author: Carolina Monzó [aut], Carlos Martínez [aut], Sonia Tarazona [cre, aut]

Maintainer: Sonia Tarazona <sotacam at gmail.com>

Citation (from within R, enter citation("MOSim")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MOSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MOSim")
Details biocViews ExperimentalDesign, RNASeq, Software, TimeCourse Version 2.5.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License GPL-3 Depends R (>= 4.2.0) Imports HiddenMarkov, zoo, IRanges, S4Vectors, dplyr, ggplot2, lazyeval, matrixStats, methods, rlang, stringi, stringr, scran, Seurat, Signac, edgeR, Rcpp System Requirements URL https://github.com/ConesaLab/MOSim Bug Reports https://github.com/ConesaLab/MOSim/issues See More Suggests testthat, knitr, rmarkdown, codetools, BiocStyle, stats, utils, purrr, scales, tibble, tidyr, Biobase, scater, SingleCellExperiment, decor, markdown, Rsamtools, igraph, leiden, bluster Linking To cpp11, Rcpp Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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