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Bioconductor - MDTS (development version)

MDTS

This is the development version of MDTS; for the stable release version, see MDTS.

Detection of de novo deletion in targeted sequencing trios

Bioconductor version: Development (3.22)

A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.

Author: Jack M.. Fu [aut, cre]

Maintainer: Jack M.. Fu <jmfu at jhsph.edu>

Citation (from within R, enter citation("MDTS")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MDTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MDTS")
Details biocViews Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology Version 1.29.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License Artistic-2.0 Depends R (>= 3.5.0) Imports GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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