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Bioconductor - MBAmethyl (development version)

MBAmethyl

This is the development version of MBAmethyl; for the stable release version, see MBAmethyl.

Model-based analysis of DNA methylation data

Bioconductor version: Development (3.22)

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

Author: Tao Wang, Mengjie Chen

Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>

Citation (from within R, enter citation("MBAmethyl")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MBAmethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBAmethyl")
Details biocViews DNAMethylation, MethylationArray, Software Version 1.43.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License Artistic-2.0 Depends R (>= 2.15) Imports System Requirements URL See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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