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Bioconductor - M3C (development version)

M3C

This is the development version of M3C; for the stable release version, see M3C.

Monte Carlo Reference-based Consensus Clustering

Bioconductor version: Development (3.22)

M3C is a consensus clustering algorithm that uses a Monte Carlo simulation to eliminate overestimation of K and can reject the null hypothesis K=1.

Author: Christopher John, David Watson

Maintainer: Christopher John <chris.r.john86 at gmail.com>

Citation (from within R, enter citation("M3C")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("M3C")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("M3C")
Details biocViews Clustering, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License AGPL-3 Depends R (>= 3.5.0) Imports ggplot2, Matrix, doSNOW, cluster, parallel, foreach, doParallel, matrixcalc, Rtsne, corpcor, umap System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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