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Bioconductor - LoomExperiment (development version)

LoomExperiment

This is the development version of LoomExperiment; for the stable release version, see LoomExperiment.

LoomExperiment container

Bioconductor version: Development (3.22)

The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.

Author: Martin Morgan, Daniel Van Twisk

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("LoomExperiment")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("LoomExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LoomExperiment")
Details biocViews DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software Version 1.27.0 In Bioconductor since BioC 3.8 (R-3.5) (6.5 years) License Artistic-2.0 Depends R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, BiocIO Imports DelayedArray, GenomicRanges, HDF5Array, Matrix, stats, stringr, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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