This is the development version of IntramiRExploreR; for the stable release version, see IntramiRExploreR.
Predicting Targets for Drosophila Intragenic miRNAsBioconductor version: Development (3.22)
Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
Author: Surajit Bhattacharya and Daniel Cox
Maintainer: Surajit Bhattacharya <sbhattach2 at childrensnational.org>
Citation (from within R, entercitation("IntramiRExploreR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("IntramiRExploreR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IntramiRExploreR")Follow Installation instructions to use this package in your R session.
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