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Bioconductor - InteractiveComplexHeatmap (development version)

InteractiveComplexHeatmap

This is the development version of InteractiveComplexHeatmap; for the stable release version, see InteractiveComplexHeatmap.

Make Interactive Complex Heatmaps

Bioconductor version: Development (3.22)

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

Author: Zuguang Gu [aut, cre] ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("InteractiveComplexHeatmap")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("InteractiveComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("InteractiveComplexHeatmap")

1. How to visualize heatmaps interactively HTML R Script 2. How interactive complex heatmap is implemented HTML R Script 3. Functions for Shiny app development HTML R Script 4. Decorations on heatmaps HTML R Script 5. Interactivate heatmaps indirectly generated by pheatmap(), heatmap.2() and heatmap() HTML R Script 6. A Shiny app for visualizing DESeq2 results HTML R Script 7. Implement interactive heatmap from scratch HTML R Script 8. Share interactive heatmaps to collaborators HTML R Script Reference Manual PDF NEWS Text LICENSE Text Details biocViews Sequencing, Software, Visualization Version 1.17.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License MIT + file LICENSE Depends R (>= 4.0.0), ComplexHeatmap(>= 2.11.0) Imports grDevices, stats, shiny, grid, GetoptLong, S4Vectors(>= 0.26.1), digest, IRanges, kableExtra (>= 1.3.1), utils, svglite, htmltools, clisymbols, jsonlite, RColorBrewer, fontawesome System Requirements URL https://github.com/jokergoo/InteractiveComplexHeatmap Bug Reports https://github.com/jokergoo/InteractiveComplexHeatmap/issues See More Suggests knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges, data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap, cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3, GOexpress, SingleCellExperiment, scater, gplots, pheatmap, airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve(>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks Linking To Enhances Depends On Me Imports Me CRISPRball, gINTomics, mineSweepR Suggests Me CTexploreR, simona, simplifyEnrichment, metasnf Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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