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Bioconductor - IVAS (development version)

IVAS

This is the development version of IVAS; for the stable release version, see IVAS.

Identification of genetic Variants affecting Alternative Splicing

Bioconductor version: Development (3.22)

Identification of genetic variants affecting alternative splicing.

Author: Seonggyun Han, Sangsoo Kim

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IVAS")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("IVAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IVAS")
IVAS : Identification of genetic Variants affecting Alternative Splicing PDF R Script Reference Manual PDF NEWS Text Details biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription Version 2.29.0 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License GPL-2 Depends R (> 3.0.0), GenomicFeatures, ggplot2, Biobase Imports doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, ggfortify, grDevices, methods, Matrix, BiocParallel, utils, stats System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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