This is the development version of HybridExpress; for the stable release version, see HybridExpress.
Comparative analysis of RNA-seq data for hybrids and their progenitorsBioconductor version: Development (3.22)
HybridExpress can be used to perform comparative transcriptomics analysis of hybrids (or allopolyploids) relative to their progenitor species. The package features functions to perform exploratory analyses of sample grouping, identify differentially expressed genes in hybrids relative to their progenitors, classify genes in expression categories (N = 12) and classes (N = 5), and perform functional analyses. We also provide users with graphical functions for the seamless creation of publication-ready figures that are commonly used in the literature.
Author: Fabricio Almeida-Silva [aut, cre] ORCID: 0000-0002-5314-2964 , Lucas Prost-Boxoen [aut] ORCID: 0000-0003-2779-9097 , Yves Van de Peer [aut] ORCID: 0000-0003-4327-3730
Maintainer: Fabricio Almeida-Silva <fabricio_almeidasilva at hotmail.com>
Citation (from within R, entercitation("HybridExpress")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HybridExpress")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HybridExpress")Follow Installation instructions to use this package in your R session.
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