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Bioconductor - HubPub (development version)

HubPub

This is the development version of HubPub; for the stable release version, see HubPub.

Utilities to create and use Bioconductor Hubs

Bioconductor version: Development (3.22)

HubPub provides users with functionality to help with the Bioconductor Hub structures. The package provides the ability to create a skeleton of a Hub style package that the user can then populate with the necessary information. There are also functions to help add resources to the Hub package metadata files as well as publish data to the Bioconductor S3 bucket.

Author: Kayla Interdonato [aut, cre], Martin Morgan [aut], Lori Shepherd [ctb]

Maintainer: Kayla Interdonato <kayla.morrell16 at gmail.com>

Citation (from within R, enter citation("HubPub")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HubPub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HubPub")
Creating A Hub Package: ExperimentHub or AnnotationHub HTML R Script HubPub: Help with publication of Hub packages HTML R Script Reference Manual PDF NEWS Text Details biocViews DataImport, Infrastructure, Software, ThirdPartyClient Version 1.17.1 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License Artistic-2.0 Depends Imports available, usethis, biocthis, dplyr, aws.s3, fs, BiocManager, utils System Requirements URL Bug Reports https://github.com/Bioconductor/HubPub/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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