This is the development version of Herper; for the stable release version, see Herper.
The Herper package is a simple toolset to install and manage conda packages and environments from RBioconductor version: Development (3.22)
Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.
Author: Matt Paul [aut] ORCID: 0000-0002-3020-7729 , Thomas Carroll [aut, cre] ORCID: 0000-0002-0073-1714 , Doug Barrows [aut], Kathryn Rozen-Gagnon [ctb]
Maintainer: Thomas Carroll <tc.infomatics at gmail.com>
Citation (from within R, entercitation("Herper")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Herper")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Herper")Follow Installation instructions to use this package in your R session.
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