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Bioconductor - HVP (development version)

HVP

This is the development version of HVP; to use it, please install the devel version of Bioconductor.

Hierarchical Variance Partitioning

Bioconductor version: Development (3.22)

HVP is a quantitative batch effect metric that estimates the proportion of variance associated with batch effects in a data set.

Author: Wei Xin Chan [aut, cre] ORCID: 0000-0003-3193-9195

Maintainer: Wei Xin Chan <cweixin at gmail.com>

Citation (from within R, enter citation("HVP")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HVP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HVP")
Details See More Suggests SingleCellExperiment, SummarizedExperiment, Seurat, SeuratObject, ggplot2, progress, testthat, splatter, scater, devtools, knitr, rmarkdown, BiocStyle, ExperimentHub Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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