This is the development version of GreyListChIP; for the stable release version, see GreyListChIP.
Grey Lists -- Mask Artefact Regions Based on ChIP InputsBioconductor version: Development (3.22)
Identify regions of ChIP experiments with high signal in the input, that lead to spurious peaks during peak calling. Remove reads aligning to these regions prior to peak calling, for cleaner ChIP analysis.
Author: Matt Eldridge [cre], Gord Brown [aut]
Maintainer: Matt Eldridge <matthew.eldridge at cruk.cam.ac.uk>
Citation (from within R, entercitation("GreyListChIP")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GreyListChIP")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GreyListChIP")Follow Installation instructions to use this package in your R session.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4