This is the development version of GeoDiff; for the stable release version, see GeoDiff.
Count model based differential expression and normalization on GeoMx RNA dataBioconductor version: Development (3.22)
A series of statistical models using count generating distributions for background modelling, feature and sample QC, normalization and differential expression analysis on GeoMx RNA data. The application of these methods are demonstrated by example data analysis vignette.
Author: Nicole Ortogero [cre], Lei Yang [aut], Zhi Yang [aut]
Maintainer: Nicole Ortogero <nortogero at nanostring.com>
Citation (from within R, entercitation("GeoDiff")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GeoDiff")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeoDiff")Follow Installation instructions to use this package in your R session.
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