This is the development version of GenomicInteractionNodes; for the stable release version, see GenomicInteractionNodes.
A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR dataBioconductor version: Development (3.22)
The GenomicInteractionNodes package can import interactions from bedpe file and define the interaction nodes, the genomic interaction sites with multiple interaction loops. The interaction nodes is a binding platform regulates one or multiple genes. The detected interaction nodes will be annotated for downstream validation.
Author: Jianhong Ou [aut, cre] ORCID: 0000-0002-8652-2488 , Yarui Diao [fnd]
Maintainer: Jianhong Ou <jou at morgridge.org>
Citation (from within R, entercitation("GenomicInteractionNodes")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GenomicInteractionNodes")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicInteractionNodes")Follow Installation instructions to use this package in your R session.
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