This is the development version of GenomAutomorphism; for the stable release version, see GenomAutomorphism.
Compute the automorphisms between DNA's Abelian group representationsBioconductor version: Development (3.22)
This is a R package to compute the automorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group. In a general scenario, from genomic regions till the whole genomes from a given population (from any species or close related species) can be algebraically represented as a direct sum of cyclic groups or more specifically Abelian p-groups. Basically, we propose the representation of multiple sequence alignments of length N bp as element of a finite Abelian group created by the direct sum of homocyclic Abelian group of prime-power order.
Author: Robersy Sanchez [aut, cre] ORCID: 0000-0002-5246-1453
Maintainer: Robersy Sanchez <genomicmath at gmail.com>
Citation (from within R, entercitation("GenomAutomorphism")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GenomAutomorphism")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomAutomorphism")Follow Installation instructions to use this package in your R session.
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