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Bioconductor - GNET2 (development version)

GNET2

This is the development version of GNET2; for the stable release version, see GNET2.

Constructing gene regulatory networks from expression data through functional module inference

Bioconductor version: Development (3.22)

Cluster genes to functional groups with E-M process. Iteratively perform TF assigning and Gene assigning, until the assignment of genes did not change, or max number of iterations is reached.

Author: Chen Chen, Jie Hou and Jianlin Cheng

Maintainer: Chen Chen <ccm3x at mail.missouri.edu>

Citation (from within R, enter citation("GNET2")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GNET2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GNET2")
Details biocViews GeneExpression, Network, NetworkInference, Regression, Software Version 1.25.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License Apache License 2.0 Depends R (>= 3.6) Imports ggplot2, xgboost, Rcpp, reshape2, grid, DiagrammeR, methods, stats, matrixStats, graphics, SummarizedExperiment, dplyr, igraph, grDevices, utils System Requirements URL https://github.com/chrischen1/GNET2 Bug Reports https://github.com/chrischen1/GNET2/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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