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Bioconductor - FISHalyseR (development version)

FISHalyseR

This is the development version of FISHalyseR; for the stable release version, see FISHalyseR.

FISHalyseR a package for automated FISH quantification

Bioconductor version: Development (3.22)

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

Author: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>

Maintainer: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>

Citation (from within R, enter citation("FISHalyseR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("FISHalyseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FISHalyseR")
FISHAlyseR Automated fluorescence in situ hybridisation quantification in R PDF R Script Reference Manual PDF NEWS Text Details biocViews CellBiology, Software Version 1.43.0 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License Artistic-2.0 Depends EBImage, abind Imports System Requirements URL See More Suggests knitr Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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