This is the development version of EnrichDO; for the stable release version, see EnrichDO.
a Global Weighted Model for Disease Ontology Enrichment AnalysisBioconductor version: Development (3.22)
To implement disease ontology (DO) enrichment analysis, this package is designed and presents a double weighted model based on the latest annotations of the human genome with DO terms, by integrating the DO graph topology on a global scale. This package exhibits high accuracy that it can identify more specific DO terms, which alleviates the over enriched problem. The package includes various statistical models and visualization schemes for discovering the associations between genes and diseases from biological big data.
Author: Liang Cheng [aut], Haixiu Yang [aut], Hongyu Fu [cre]
Maintainer: Hongyu Fu <2287531995 at qq.com>
Citation (from within R, entercitation("EnrichDO")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("EnrichDO")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EnrichDO")Follow Installation instructions to use this package in your R session.
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