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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../html/EnhancedVolcano.html below:

Bioconductor - EnhancedVolcano (development version)

EnhancedVolcano

This is the development version of EnhancedVolcano; for the stable release version, see EnhancedVolcano.

Publication-ready volcano plots with enhanced colouring and labeling

Bioconductor version: Development (3.22)

Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many point labels in the plot window as possible, thus avoiding 'clogging' up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 4 different types of attributes in the same plot space via colour, shape, size, and shade parameter configurations.

Author: Kevin Blighe [aut, cre], Sharmila Rana [aut], Emir Turkes [ctb], Benjamin Ostendorf [ctb], Andrea Grioni [ctb], Myles Lewis [aut]

Maintainer: Kevin Blighe <kevin at clinicalbioinformatics.co.uk>

Citation (from within R, enter citation("EnhancedVolcano")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("EnhancedVolcano")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnhancedVolcano")
Publication-ready volcano plots with enhanced colouring and labeling HTML R Script Reference Manual PDF NEWS Text Details See More Suggests ggalt, ggrastr, RUnit, BiocGenerics, knitr, DESeq2, pasilla, airway, org.Hs.eg.db, gridExtra, magrittr, rmarkdown Linking To Enhances Depends On Me Imports Me chevreulShiny, RFLOMICS, ExpHunterSuite Suggests Me xCell2, rliger Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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