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Bioconductor - ENmix (development version)

ENmix

This is the development version of ENmix; for the stable release version, see ENmix.

Quality control and analysis tools for Illumina DNA methylation BeadChip

Bioconductor version: Development (3.22)

Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.

Author: Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb]

Maintainer: Zongli Xu <xuz at niehs.nih.gov>

Citation (from within R, enter citation("ENmix")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ENmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ENmix")
Details biocViews BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel Version 1.45.2 In Bioconductor since BioC 3.1 (R-3.2) (10 years) License Artistic-2.0 Depends parallel, doParallel, foreach, SummarizedExperiment, stats, R (>= 3.5.0) Imports grDevices, graphics, matrixStats, methods, utils, irlba, GenomeInfoDb, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors System Requirements URL https://github.com/Bioconductor/ENmix Bug Reports https://github.com/Bioconductor/ENmix/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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