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Bioconductor - Dune (development version)

Dune

This is the development version of Dune; for the stable release version, see Dune.

Improving replicability in single-cell RNA-Seq cell type discovery

Bioconductor version: Development (3.22)

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

Author: Hector Roux de Bezieux [aut, cre] ORCID: 0000-0002-1489-8339 , Kelly Street [aut]

Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux at berkeley.edu>

Citation (from within R, enter citation("Dune")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Dune")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Dune")
Details biocViews Clustering, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics, Visualization Version 1.21.0 In Bioconductor since BioC 3.11 (R-4.0) (5 years) License MIT + file LICENSE Depends R (>= 3.6) Imports BiocParallel, SummarizedExperiment, utils, ggplot2, dplyr, tidyr, RColorBrewer, magrittr, gganimate, purrr, aricode System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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