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Bioconductor - DeconRNASeq (development version)

DeconRNASeq

This is the development version of DeconRNASeq; for the stable release version, see DeconRNASeq.

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Bioconductor version: Development (3.22)

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

Author: Ting Gong <tinggong at gmail.com> Joseph D. Szustakowski <joseph.szustakowski at novartis.com>

Maintainer: Ting Gong <tinggong at gmail.com>

Citation (from within R, enter citation("DeconRNASeq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DeconRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeconRNASeq")
Details See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me ADAPTS Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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