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Bioconductor - DNAcopy (development version)

DNAcopy

This is the development version of DNAcopy; for the stable release version, see DNAcopy.

DNA Copy Number Data Analysis

Bioconductor version: Development (3.22)

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

Citation (from within R, enter citation("DNAcopy")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DNAcopy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAcopy")
Details biocViews CopyNumberVariation, Microarray, Software Version 1.83.0 In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years) License GPL (>= 2) Depends Imports System Requirements URL See More Suggests Linking To Enhances Depends On Me CGHcall, cghMCR, CRImage, PureCN, CSclone, ParDNAcopy, saasCNV Imports Me ADaCGH2, ChAMP, CNAnorm, CNVrd2, conumee, GWASTools, maftools, MDTS, MEDIPS, MinimumDistance, QDNAseq, Repitools, SCOPE, jointseg, PSCBS Suggests Me cn.mops, CopyNumberPlots, fastseg, nullranges, sesame, ACNE, aroma.cn, aroma.core, calmate Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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