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Bioconductor - DEWSeq (development version)

DEWSeq

This is the development version of DEWSeq; for the stable release version, see DEWSeq.

Differential Expressed Windows Based on Negative Binomial Distribution

Bioconductor version: Development (3.22)

DEWSeq is a sliding window approach for the analysis of differentially enriched binding regions eCLIP or iCLIP next generation sequencing data.

Author: Sudeep Sahadevan [aut], Thomas Schwarzl [aut], bioinformatics team Hentze [aut, cre]

Maintainer: bioinformatics team Hentze <biohentze at embl.de>

Citation (from within R, enter citation("DEWSeq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DEWSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEWSeq")
Details biocViews DifferentialExpression, FunctionalGenomics, GeneRegulation, Sequencing, Software Version 1.23.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License LGPL (>= 3) Depends R (>= 4.0.0), R.utils, DESeq2, BiocParallel Imports BiocGenerics, data.table (>= 1.11.8), GenomeInfoDb, GenomicRanges, methods, S4Vectors, SummarizedExperiment, stats, utils System Requirements URL https://github.com/EMBL-Hentze-group/DEWSeq/ Bug Reports https://github.com/EMBL-Hentze-group/DEWSeq/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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