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Bioconductor - DEFormats (development version)

DEFormats

This is the development version of DEFormats; for the stable release version, see DEFormats.

Differential gene expression data formats converter

Bioconductor version: Development (3.22)

Convert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at gmail.com>

Citation (from within R, enter citation("DEFormats")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DEFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEFormats")
Differential gene expression data formats converter HTML R Script Reference Manual PDF NEWS Text Details biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription Version 1.37.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License GPL-3 Depends Imports checkmate, data.table, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment System Requirements URL https://github.com/aoles/DEFormats Bug Reports https://github.com/aoles/DEFormats/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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