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Bioconductor - CrispRVariants (development version)

CrispRVariants

This is the development version of CrispRVariants; for the stable release version, see CrispRVariants.

Tools for counting and visualising mutations in a target location

Bioconductor version: Development (3.22)

CrispRVariants provides tools for analysing the results of a CRISPR-Cas9 mutagenesis sequencing experiment, or other sequencing experiments where variants within a given region are of interest. These tools allow users to localize variant allele combinations with respect to any genomic location (e.g. the Cas9 cut site), plot allele combinations and calculate mutation rates with flexible filtering of unrelated variants.

Author: Helen Lindsay [aut, cre]

Maintainer: Helen Lindsay <helen.lindsay at chuv.ch>

Citation (from within R, enter citation("CrispRVariants")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CrispRVariants")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CrispRVariants")
Details biocViews CRISPR, DataRepresentation, GeneticVariability, GenomicVariation, ImmunoOncology, Sequencing, Software, VariantDetection, Visualization Version 1.37.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License GPL-2 Depends R (>= 4.3.0), ggplot2 (>= 2.2.0) Imports AnnotationDbi, BiocParallel, Biostrings, methods, GenomeInfoDb, GenomicAlignments, GenomicRanges, grDevices, grid, gridExtra, IRanges, reshape2, Rsamtools, S4Vectors(>= 0.9.38), utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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