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Bioconductor - ChIPComp (development version)

ChIPComp

This is the development version of ChIPComp; for the stable release version, see ChIPComp.

Quantitative comparison of multiple ChIP-seq datasets

Bioconductor version: Development (3.22)

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

Maintainer: Li Chen <li.chen at emory.edu>

Citation (from within R, enter citation("ChIPComp")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ChIPComp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPComp")
Details biocViews ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription Version 1.39.0 In Bioconductor since BioC 3.2 (R-3.2) (9.5 years) License GPL Depends R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors Imports Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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