A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../html/CNVfilteR.html below:

Bioconductor - CNVfilteR (development version)

CNVfilteR

This is the development version of CNVfilteR; for the stable release version, see CNVfilteR.

Identifies false positives of CNV calling tools by using SNV calls

Bioconductor version: Development (3.22)

CNVfilteR identifies those CNVs that can be discarded by using the single nucleotide variant (SNV) calls that are usually obtained in common NGS pipelines.

Author: Jose Marcos Moreno-Cabrera [aut, cre] ORCID: 0000-0001-8570-0345 , Bernat Gel [aut]

Maintainer: Jose Marcos Moreno-Cabrera <jpuntomarcos at gmail.com>

Citation (from within R, enter citation("CNVfilteR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CNVfilteR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNVfilteR")
Details biocViews CopyNumberVariation, DNASeq, DataImport, Sequencing, Software, Visualization Version 1.23.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License Artistic-2.0 Depends R (>= 4.3) Imports IRanges, GenomicRanges, SummarizedExperiment, pracma, regioneR, assertthat, karyoploteR, CopyNumberPlots, graphics, utils, VariantAnnotation, Rsamtools, GenomeInfoDb, Biostrings, methods System Requirements URL https://github.com/jpuntomarcos/CNVfilteR Bug Reports https://github.com/jpuntomarcos/CNVfilteR/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4