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Bioconductor - BiocSklearn (development version)

BiocSklearn

This is the development version of BiocSklearn; for the stable release version, see BiocSklearn.

interface to python sklearn via Rstudio reticulate

Bioconductor version: Development (3.22)

This package provides interfaces to selected sklearn elements, and demonstrates fault tolerant use of python modules requiring extensive iteration.

Author: Vince Carey [cre, aut]

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("BiocSklearn")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocSklearn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocSklearn")
Details biocViews DimensionReduction, Infrastructure, Software, StatisticalMethod Version 1.31.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License Artistic-2.0 Depends R (>= 4.0), reticulate, methods, SummarizedExperiment Imports basilisk System Requirements python (>= 2.7), sklearn, numpy, pandas, h5py URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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