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Bioconductor - BiGGR (development version)

BiGGR

This is the development version of BiGGR; for the stable release version, see BiGGR.

Constraint based modeling in R using metabolic reconstruction databases

Bioconductor version: Development (3.22)

This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.

Author: Anand K. Gavai, Hannes Hettling

Maintainer: Anand K. Gavai <anand.gavai at bioinformatics.nl>, Hannes Hettling <hannes.hettling at naturalis.nl>

Citation (from within R, enter citation("BiGGR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiGGR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiGGR")
Details biocViews GraphAndNetwork, Metabolomics, Network, Pathway, Software, Systems Biology, Visualization Version 1.45.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License file LICENSE Depends R (>= 2.14.0), rsbml, hyperdraw, LIM, stringr Imports hypergraph, limSolve System Requirements URL http://www.bioconductor.org/ See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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