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Bioconductor - BasicSTARRseq (development version)

BasicSTARRseq

This is the development version of BasicSTARRseq; for the stable release version, see BasicSTARRseq.

Basic peak calling on STARR-seq data

Bioconductor version: Development (3.22)

Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.

Author: Annika Buerger

Maintainer: Annika Buerger <annika.buerger at ukmuenster.de>

Citation (from within R, enter citation("BasicSTARRseq")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BasicSTARRseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BasicSTARRseq")
Details biocViews Coverage, FunctionalGenomics, FunctionalPrediction, GeneRegulation, PeakDetection, Software Version 1.37.0 In Bioconductor since BioC 3.3 (R-3.3) (9 years) License LGPL-3 Depends GenomicRanges, GenomicAlignments Imports S4Vectors, methods, IRanges, GenomeInfoDb, stats System Requirements URL See More Suggests knitr Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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