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Bioconductor - BADER (development version)

BADER

This is the development version of BADER; for the stable release version, see BADER.

Bayesian Analysis of Differential Expression in RNA Sequencing Data

Bioconductor version: Development (3.22)

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Author: Andreas Neudecker, Matthias Katzfuss

Maintainer: Andreas Neudecker <a.neudecker at arcor.de>

Citation (from within R, enter citation("BADER")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BADER")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BADER")
Analysing RNA-Seq data with the "BADER" package PDF R Script Reference Manual PDF Details See More Suggests pasilla(>= 0.2.10) Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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