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Bioconductor - ASpli (development version)

ASpli

This is the development version of ASpli; for the stable release version, see ASpli.

Analysis of Alternative Splicing Using RNA-Seq

Bioconductor version: Development (3.22)

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Ariel Chernomoretz <algo107 at gmail.com>

Citation (from within R, enter citation("ASpli")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")
Details biocViews Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription Version 2.19.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL Depends methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi Imports GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply, txdbmaker System Requirements URL See More Suggests Linking To Enhances Depends On Me Imports Me saseR Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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