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Bioconductor - ASGSCA (development version)

ASGSCA

This is the development version of ASGSCA; for the stable release version, see ASGSCA.

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

Bioconductor version: Development (3.22)

The package provides tools to model and test the association between multiple genotypes and multiple traits, taking into account the prior biological knowledge. Genes, and clinical pathways are incorporated in the model as latent variables. The method is based on Generalized Structured Component Analysis (GSCA).

Author: Hela Romdhani, Stepan Grinek , Heungsun Hwang and Aurelie Labbe.

Maintainer: Hela Romdhani <hela.romdhani at mcgill.ca>

Citation (from within R, enter citation("ASGSCA")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ASGSCA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASGSCA")
Association Studies using Generalized Structured Equation Models. PDF R Script Reference Manual PDF NEWS Text Details See More Suggests BiocStyle Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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