This is the development version of ASAFE; for the stable release version, see ASAFE.
Ancestry Specific Allele Frequency EstimationBioconductor version: Development (3.22)
Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.
Author: Qian Zhang <qszhang at uw.edu>
Maintainer: Qian Zhang <qszhang at uw.edu>
Citation (from within R, entercitation("ASAFE")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ASAFE")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASAFE")
Details See More Package Archives
Follow Installation instructions to use this package in your R session.
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