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Bioconductor - mdqc (development version)

mdqc

This is the development version of mdqc; for the stable release version, see mdqc.

Mahalanobis Distance Quality Control for microarrays

Bioconductor version: Development (3.22)

MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

Author: Justin Harrington

Maintainer: Gabriela Cohen-Freue <gcohen at mrl.ubc.ca>

Citation (from within R, enter citation("mdqc")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mdqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mdqc")
Details See More Suggests Linking To Enhances Depends On Me Imports Me arrayMvout Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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