This is the development version of enrichViewNet; for the stable release version, see enrichViewNet.
From functional enrichment results to biological networksBioconductor version: Development (3.22)
This package enables the visualization of functional enrichment results as network graphs. First the package enables the visualization of enrichment results, in a format corresponding to the one generated by gprofiler2, as a customizable Cytoscape network. In those networks, both gene datasets (GO terms/pathways/protein complexes) and genes associated to the datasets are represented as nodes. While the edges connect each gene to its dataset(s). The package also provides the option to create enrichment maps from functional enrichment results. Enrichment maps enable the visualization of enriched terms into a network with edges connecting overlapping genes.
Author: Astrid Deschênes [aut, cre] ORCID: 0000-0001-7846-6749 , Pascal Belleau [aut] ORCID: 0000-0002-0802-1071 , Robert L. Faure [aut] ORCID: 0000-0003-1798-4723 , Maria J. Fernandes [aut] ORCID: 0000-0002-3973-025X , Alexander Krasnitz [aut], David A. Tuveson [aut] ORCID: 0000-0002-8017-2712
Maintainer: Astrid Deschênes <adeschen at hotmail.com>
Citation (from within R, entercitation("enrichViewNet")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("enrichViewNet")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("enrichViewNet")Follow Installation instructions to use this package in your R session.
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