This is the development version of Structstrings; for the stable release version, see Structstrings.
Implementation of the dot bracket annotations with BiostringsBioconductor version: Development (3.22)
The Structstrings package implements the widely used dot bracket annotation for storing base pairing information in structured RNA. Structstrings uses the infrastructure provided by the Biostrings package and derives the DotBracketString and related classes from the BString class. From these, base pair tables can be produced for in depth analysis. In addition, the loop indices of the base pairs can be retrieved as well. For better efficiency, information conversion is implemented in C, inspired to a large extend by the ViennaRNA package.
Author: Felix G.M. Ernst [aut, cre] ORCID: 0000-0001-5064-0928
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
Citation (from within R, entercitation("Structstrings")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Structstrings")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Structstrings")Follow Installation instructions to use this package in your R session.
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