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Bioconductor - SplicingFactory (development version)

This is the development version of SplicingFactory; for the stable release version, see SplicingFactory.

Bioconductor version: Development (3.22)

The SplicingFactory R package uses transcript-level expression values to analyze splicing diversity based on various statistical measures, like Shannon entropy or the Gini index. These measures can quantify transcript isoform diversity within samples or between conditions. Additionally, the package analyzes the isoform diversity data, looking for significant changes between conditions.

Author: Peter A. Szikora [aut], Tamas Por [aut], Endre Sebestyen [aut, cre] ORCID: 0000-0001-5470-2161

Maintainer: Endre Sebestyen <endre.sebestyen at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SplicingFactory")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SplicingFactory")

Follow Installation instructions to use this package in your R session.

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