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Bioconductor - QSutils (development version)

This is the development version of QSutils; for the stable release version, see QSutils.

Bioconductor version: Development (3.22)

Set of utility functions for viral quasispecies analysis with NGS data. Most functions are equally useful for metagenomic studies. There are three main types: (1) data manipulation and exploration—functions useful for converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and visualizing haplotype alignments. (2) diversity indices—functions to compute diversity and entropy, in which incidence, abundance, and functional indices are considered. (3) data simulation—functions useful for generating random viral quasispecies data.

Author: Mercedes Guerrero-Murillo [cre, aut] ORCID: 0000-0002-5556-2460 , Josep Gregori i Font [aut] ORCID: 0000-0002-4253-8015

Maintainer: Mercedes Guerrero-Murillo <mergumu at gmail.com>

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("QSutils")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("QSutils")

Follow Installation instructions to use this package in your R session.

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